GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_1AA41ED33 Traes_4AL_1AA41ED33	ta_iwgsc_4al_v2_7034100	2	3222	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_1AA41ED33.1 Traes_4AL_1AA41ED33.1 PAC:31901806	High	No	1449		Get ORF Coding potential... Type: noncoding Potential: -1.297 Folding energies... MFEI: -24.086 AMFE: -0.633 GC content %: 38.026
Taestivum_Traes_4AL_1AA41ED33.2 Traes_4AL_1AA41ED33.2 PAC:31901805	High	No	1170		Get ORF Coding potential... Type: noncoding Potential: -1.267 Folding energies... MFEI: -23.803 AMFE: -0.603 GC content %: 39.487
Taestivum_Traes_4AL_1AA41ED33.3 Traes_4AL_1AA41ED33.3 PAC:31901807	High	No	1359		Get ORF Coding potential... Type: noncoding Potential: -1.288 Folding energies... MFEI: -24.606 AMFE: -0.643 GC content %: 38.263

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).