GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_234D9FEC7 Traes_4AL_234D9FEC7	ta_iwgsc_4al_v2_7171246	4930	10426	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_234D9FEC7.4 Traes_4AL_234D9FEC7.4 PAC:31853167	High	No	1324		Get ORF Coding potential... Type: noncoding Potential: -0.833 Folding energies... MFEI: -34.841 AMFE: -0.639 GC content %: 54.532
Taestivum_Traes_4AL_234D9FEC7.5 Traes_4AL_234D9FEC7.5 PAC:31853168	High	No	860		Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -32.151 AMFE: -0.655 GC content %: 49.070
Taestivum_Traes_4AL_234D9FEC7.6 Traes_4AL_234D9FEC7.6 PAC:31853169	High	No	1354		Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -32.541 AMFE: -0.674 GC content %: 48.301
Taestivum_Traes_4AL_234D9FEC7.8 Traes_4AL_234D9FEC7.8 PAC:31853170	High	No	238		Get ORF Coding potential... Type: noncoding Potential: -1.140 Folding energies... MFEI: -31.891 AMFE: -0.516 GC content %: 61.765

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).