GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_29D81B290 Traes_4AL_29D81B290	ta_iwgsc_4al_v2_7085274	2	1626	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_29D81B290.1 Traes_4AL_29D81B290.1 PAC:31883902	High	No	380		Get ORF Coding potential... Type: noncoding Potential: -1.171 Folding energies... MFEI: -24.658 AMFE: -0.539 GC content %: 45.789
Taestivum_Traes_4AL_29D81B290.2 Traes_4AL_29D81B290.2 PAC:31883903	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -25.887 AMFE: -0.591 GC content %: 43.830

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).