Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_4AL_42B00DD28 Traes_4AL_42B00DD28 |
ta_iwgsc_4al_v2_7087876 | 2495 | 6187 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_4AL_42B00DD28.4 Traes_4AL_42B00DD28.4 PAC:31843956 |
Low | No | 641 | Get ORF Coding potential... Type: noncoding Potential: -0.971 Folding energies... MFEI: -28.830 AMFE: -0.682 GC content %: 42.278 | |
Taestivum_Traes_4AL_42B00DD28.5 Traes_4AL_42B00DD28.5 PAC:31843957 |
Low | No | 621 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -28.792 AMFE: -0.660 GC content %: 43.639 | |
Taestivum_Traes_4AL_42B00DD28.6 Traes_4AL_42B00DD28.6 PAC:31843958 |
Low | Yes | 1281 | Get ORF Coding potential... Type: noncoding Potential: -1.077 Folding energies... MFEI: -28.158 AMFE: -0.707 GC content %: 39.813 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_4AL_42B00DD28.6 | Rfam | 11.0 | MIR1122 | 3.4e-5 |