GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_5158CBEAE Traes_4AL_5158CBEAE	ta_iwgsc_4al_v2_7068237	1883	3928	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_5158CBEAE.1 Traes_4AL_5158CBEAE.1 PAC:31918138	High	No	1275		Get ORF Coding potential... Type: noncoding Potential: -1.376 Folding energies... MFEI: -25.420 AMFE: -0.590 GC content %: 43.059
Taestivum_Traes_4AL_5158CBEAE.2 Traes_4AL_5158CBEAE.2 PAC:31918139	High	No	1398		Get ORF Coding potential... Type: noncoding Potential: -1.380 Folding energies... MFEI: -25.751 AMFE: -0.634 GC content %: 40.629

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).