GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_536162239 Traes_4AL_536162239	ta_iwgsc_4al_v2_7175857	8536	17463	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_536162239.1 Traes_4AL_536162239.1 PAC:32016163	High	No	378		Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -36.746 AMFE: -0.698 GC content %: 52.646
Taestivum_Traes_4AL_536162239.2 Traes_4AL_536162239.2 PAC:32016164	High	No	588		Get ORF Coding potential... Type: noncoding Potential: -1.086 Folding energies... MFEI: -31.156 AMFE: -0.679 GC content %: 45.918

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).