GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_5B4F878CD Traes_4AL_5B4F878CD	ta_iwgsc_4al_v2_7151452	1	3029	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_5B4F878CD.10 Traes_4AL_5B4F878CD.10 PAC:31992432	High	No	1595		Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -23.160 AMFE: -0.637 GC content %: 36.364
Taestivum_Traes_4AL_5B4F878CD.11 Traes_4AL_5B4F878CD.11 PAC:31992434	High	No	1010		Get ORF Coding potential... Type: noncoding Potential: -1.320 Folding energies... MFEI: -22.574 AMFE: -0.606 GC content %: 37.228

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).