GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_6CFFB9E2F Traes_4AL_6CFFB9E2F	ta_iwgsc_4al_v2_7173530	1	1803	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_6CFFB9E2F.1 Traes_4AL_6CFFB9E2F.1 PAC:31736920	Low	No	815		Get ORF Coding potential... Type: noncoding Potential: -0.567 Folding energies... MFEI: -26.577 AMFE: -0.635 GC content %: 41.840
Taestivum_Traes_4AL_6CFFB9E2F.4 Traes_4AL_6CFFB9E2F.4 PAC:31736923	High	No	746		Get ORF Coding potential... Type: noncoding Potential: -0.956 Folding energies... MFEI: -26.126 AMFE: -0.645 GC content %: 40.483

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).