Gene
Taestivum Traes 4AL BD0504B21
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4AL_BD0504B21 Traes_4AL_BD0504B21 |
ta_iwgsc_4al_v2_7090896 | 3329 | 6377 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4AL_BD0504B21.1 Traes_4AL_BD0504B21.1 PAC:31861256 |
High | No | 1219 | Get ORF Coding potential... Type: noncoding Potential: -0.659 Folding energies... MFEI: -35.775 AMFE: -0.618 GC content %: 57.916 | |
| Taestivum_Traes_4AL_BD0504B21.2 Traes_4AL_BD0504B21.2 PAC:31861254 |
High | No | 606 | Get ORF Coding potential... Type: noncoding Potential: -0.571 Folding energies... MFEI: -37.261 AMFE: -0.634 GC content %: 58.746 | |
| Taestivum_Traes_4AL_BD0504B21.3 Traes_4AL_BD0504B21.3 PAC:31861257 |
High | No | 630 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -30.397 AMFE: -0.555 GC content %: 54.762 | |
| Taestivum_Traes_4AL_BD0504B21.4 Traes_4AL_BD0504B21.4 PAC:31861255 |
High | No | 491 | Get ORF Coding potential... Type: noncoding Potential: -0.732 Folding energies... MFEI: -37.597 AMFE: -0.615 GC content %: 61.100 | |
| Taestivum_Traes_4AL_BD0504B21.5 Traes_4AL_BD0504B21.5 PAC:31861258 |
High | No | 671 | Get ORF Coding potential... Type: noncoding Potential: -1.186 Folding energies... MFEI: -31.610 AMFE: -0.586 GC content %: 53.949 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
