GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AL_F8464F392 Traes_4AL_F8464F392	ta_iwgsc_4al_v2_7175716	11119	19073	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AL_F8464F392.2 Traes_4AL_F8464F392.2 PAC:31737223	Low	No	519		Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -25.568 AMFE: -0.572 GC content %: 44.701
Taestivum_Traes_4AL_F8464F392.3 Traes_4AL_F8464F392.3 PAC:31737224	High	No	292		Get ORF Coding potential... Type: noncoding Potential: -0.515 Folding energies... MFEI: -26.952 AMFE: -0.570 GC content %: 47.260
Taestivum_Traes_4AL_F8464F392.4 Traes_4AL_F8464F392.4 PAC:31737225	High	No	377		Get ORF Coding potential... Type: noncoding Potential: -0.669 Folding energies... MFEI: -27.851 AMFE: -0.574 GC content %: 48.541

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).