GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AS_151E507DC Traes_4AS_151E507DC	ta_iwgsc_4as_v2_6013516	837	10049	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AS_151E507DC.4 Traes_4AS_151E507DC.4 PAC:31901607	Low	No	771		Get ORF Coding potential... Type: noncoding Potential: -1.178 Folding energies... MFEI: -24.682 AMFE: -0.589 GC content %: 41.894
Taestivum_Traes_4AS_151E507DC.5 Traes_4AS_151E507DC.5 PAC:31901608	High	No	440		Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -26.955 AMFE: -0.659 GC content %: 40.909

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).