GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AS_66E6E01E0 Traes_4AS_66E6E01E0	ta_iwgsc_4as_v2_5946066	4686	6065	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AS_66E6E01E0.1 Traes_4AS_66E6E01E0.1 PAC:31930073	High	No	443		Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -30.090 AMFE: -0.546 GC content %: 55.079
Taestivum_Traes_4AS_66E6E01E0.2 Traes_4AS_66E6E01E0.2 PAC:31930072	High	No	599		Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -23.606 AMFE: -0.500 GC content %: 47.245
Taestivum_Traes_4AS_66E6E01E0.3 Traes_4AS_66E6E01E0.3 PAC:31930074	High	No	646		Get ORF Coding potential... Type: noncoding Potential: -0.872 Folding energies... MFEI: -28.808 AMFE: -0.608 GC content %: 47.368

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).