GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AS_A6F980547 Traes_4AS_A6F980547	ta_iwgsc_4as_v2_5950701	8511	9775	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AS_A6F980547.1 Traes_4AS_A6F980547.1 PAC:31753086	High	No	1154		Get ORF Coding potential... Type: noncoding Potential: -0.641 Folding energies... MFEI: -33.735 AMFE: -0.638 GC content %: 52.860
Taestivum_Traes_4AS_A6F980547.2 Traes_4AS_A6F980547.2 PAC:31753087	High	No	234		Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -29.573 AMFE: -0.435 GC content %: 67.949

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).