GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AS_A97064408 Traes_4AS_A97064408	ta_iwgsc_4as_v2_6015007	8015	22081	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AS_A97064408.10 Traes_4AS_A97064408.10 PAC:31839406	Low	No	560		Get ORF Coding potential... Type: noncoding Potential: -0.097 Folding energies... MFEI: -28.536 AMFE: -0.529 GC content %: 53.929
Taestivum_Traes_4AS_A97064408.5 Traes_4AS_A97064408.5 PAC:31839403	Low	No	294		Get ORF Coding potential... Type: noncoding Potential: -1.128 Folding energies... MFEI: -17.517 AMFE: -0.409 GC content %: 42.857
Taestivum_Traes_4AS_A97064408.6 Traes_4AS_A97064408.6 PAC:31839404	High	No	603		Get ORF Coding potential... Type: noncoding Potential: -1.195 Folding energies... MFEI: -22.454 AMFE: -0.410 GC content %: 54.726
Taestivum_Traes_4AS_A97064408.7 Traes_4AS_A97064408.7 PAC:31839405	High	No	417		Get ORF Coding potential... Type: noncoding Potential: -1.342 Folding energies... MFEI: -21.799 AMFE: -0.457 GC content %: 47.722

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).