Gene
Taestivum Traes 4AS BAF81FFF7
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4AS_BAF81FFF7 Traes_4AS_BAF81FFF7 |
ta_iwgsc_4as_v2_5958914 | 2913 | 11248 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4AS_BAF81FFF7.38 Traes_4AS_BAF81FFF7.38 PAC:31865510 |
High | No | 3110 | Get ORF Coding potential... Type: noncoding Potential: -0.854 Folding energies... MFEI: -27.055 AMFE: -0.675 GC content %: 40.064 | |
| Taestivum_Traes_4AS_BAF81FFF7.46 Traes_4AS_BAF81FFF7.46 PAC:31865519 |
High | No | 2097 | Get ORF Coding potential... Type: noncoding Potential: -0.930 Folding energies... MFEI: -26.867 AMFE: -0.629 GC content %: 42.728 | |
| Taestivum_Traes_4AS_BAF81FFF7.52 Traes_4AS_BAF81FFF7.52 PAC:31865525 |
High | No | 2141 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -27.511 AMFE: -0.657 GC content %: 41.896 | |
| Taestivum_Traes_4AS_BAF81FFF7.53 Traes_4AS_BAF81FFF7.53 PAC:31865526 |
High | No | 718 | Get ORF Coding potential... Type: noncoding Potential: -0.801 Folding energies... MFEI: -25.501 AMFE: -0.616 GC content %: 41.365 | |
| Taestivum_Traes_4AS_BAF81FFF7.57 Traes_4AS_BAF81FFF7.57 PAC:31865531 |
High | No | 2122 | Get ORF Coding potential... Type: noncoding Potential: -0.826 Folding energies... MFEI: -28.233 AMFE: -0.636 GC content %: 44.392 | |
| Taestivum_Traes_4AS_BAF81FFF7.58 Traes_4AS_BAF81FFF7.58 PAC:31865530 |
High | No | 2476 | Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -28.405 AMFE: -0.631 GC content %: 45.032 | |
| Taestivum_Traes_4AS_BAF81FFF7.60 Traes_4AS_BAF81FFF7.60 PAC:31865534 |
High | No | 1407 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -28.152 AMFE: -0.608 GC content %: 46.269 | |
| Taestivum_Traes_4AS_BAF81FFF7.62 Traes_4AS_BAF81FFF7.62 PAC:31865536 |
High | No | 2087 | Get ORF Coding potential... Type: noncoding Potential: -0.806 Folding energies... MFEI: -25.204 AMFE: -0.662 GC content %: 38.045 | |
| Taestivum_Traes_4AS_BAF81FFF7.63 Traes_4AS_BAF81FFF7.63 PAC:31865537 |
High | No | 3191 | Get ORF Coding potential... Type: noncoding Potential: -0.857 Folding energies... MFEI: -27.731 AMFE: -0.656 GC content %: 42.275 | |
| Taestivum_Traes_4AS_BAF81FFF7.64 Traes_4AS_BAF81FFF7.64 PAC:31865535 |
High | No | 3138 | Get ORF Coding potential... Type: noncoding Potential: -0.855 Folding energies... MFEI: -27.613 AMFE: -0.646 GC content %: 42.766 | |
| Taestivum_Traes_4AS_BAF81FFF7.65 Traes_4AS_BAF81FFF7.65 PAC:31865538 |
High | No | 2886 | Get ORF Coding potential... Type: noncoding Potential: -0.847 Folding energies... MFEI: -27.786 AMFE: -0.661 GC content %: 42.065 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
