GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4AS_BC4867A74 Traes_4AS_BC4867A74	ta_iwgsc_4as_v2_5940195	2276	3677	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4AS_BC4867A74.1 Traes_4AS_BC4867A74.1 PAC:31873910	High	No	260		Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -40.923 AMFE: -0.608 GC content %: 67.308
Taestivum_Traes_4AS_BC4867A74.2 Traes_4AS_BC4867A74.2 PAC:31873911	High	No	655		Get ORF Coding potential... Type: noncoding Potential: -0.831 Folding energies... MFEI: -33.038 AMFE: -0.599 GC content %: 55.115
Taestivum_Traes_4AS_BC4867A74.3 Traes_4AS_BC4867A74.3 PAC:31873912	High	No	875		Get ORF Coding potential... Type: noncoding Potential: -0.892 Folding energies... MFEI: -33.977 AMFE: -0.652 GC content %: 52.114

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).