Gene
Taestivum Traes 4AS F4D4BB0B2
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4AS_F4D4BB0B2 Traes_4AS_F4D4BB0B2 |
ta_iwgsc_4as_v2_5938339 | 3227 | 6857 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4AS_F4D4BB0B2.1 Traes_4AS_F4D4BB0B2.1 PAC:31941950 |
High | No | 1322 | Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -37.224 AMFE: -0.642 GC content %: 58.018 | |
| Taestivum_Traes_4AS_F4D4BB0B2.10 Traes_4AS_F4D4BB0B2.10 PAC:31941947 |
High | No | 891 | Get ORF Coding potential... Type: noncoding Potential: -1.091 Folding energies... MFEI: -26.117 AMFE: -0.614 GC content %: 42.536 | |
| Taestivum_Traes_4AS_F4D4BB0B2.11 Traes_4AS_F4D4BB0B2.11 PAC:31941949 |
High | No | 1221 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -36.134 AMFE: -0.638 GC content %: 56.593 | |
| Taestivum_Traes_4AS_F4D4BB0B2.12 Traes_4AS_F4D4BB0B2.12 PAC:31941951 |
High | No | 2132 | Get ORF Coding potential... Type: noncoding Potential: -1.049 Folding energies... MFEI: -28.072 AMFE: -0.637 GC content %: 44.090 | |
| Taestivum_Traes_4AS_F4D4BB0B2.13 Traes_4AS_F4D4BB0B2.13 PAC:31941952 |
High | No | 1107 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -26.531 AMFE: -0.703 GC content %: 37.760 | |
| Taestivum_Traes_4AS_F4D4BB0B2.7 Traes_4AS_F4D4BB0B2.7 PAC:31941945 |
High | No | 1946 | Get ORF Coding potential... Type: noncoding Potential: -1.011 Folding energies... MFEI: -32.199 AMFE: -0.622 GC content %: 51.747 | |
| Taestivum_Traes_4AS_F4D4BB0B2.8 Traes_4AS_F4D4BB0B2.8 PAC:31941946 |
High | No | 1749 | Get ORF Coding potential... Type: noncoding Potential: -0.988 Folding energies... MFEI: -33.825 AMFE: -0.623 GC content %: 54.317 | |
| Taestivum_Traes_4AS_F4D4BB0B2.9 Traes_4AS_F4D4BB0B2.9 PAC:31941948 |
High | No | 1901 | Get ORF Coding potential... Type: noncoding Potential: -1.165 Folding energies... MFEI: -23.793 AMFE: -0.636 GC content %: 37.401 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
