GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BL_0F3CAE6FF Traes_4BL_0F3CAE6FF	ta_iwgsc_4bl_v1_7039048	3926	6110	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BL_0F3CAE6FF.1 Traes_4BL_0F3CAE6FF.1 PAC:31791359	High	No	1547		Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -27.085 AMFE: -0.668 GC content %: 40.530
Taestivum_Traes_4BL_0F3CAE6FF.2 Traes_4BL_0F3CAE6FF.2 PAC:31791360	High	No	1085		Get ORF Coding potential... Type: noncoding Potential: -1.197 Folding energies... MFEI: -21.991 AMFE: -0.643 GC content %: 34.194

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).