GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BL_10F325B7E Traes_4BL_10F325B7E	ta_iwgsc_4bl_v1_7040630	4	9009	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BL_10F325B7E.1 Traes_4BL_10F325B7E.1 PAC:32024840	High	No	1315		Get ORF Coding potential... Type: noncoding Potential: -0.083 Folding energies... MFEI: -24.456 AMFE: -0.567 GC content %: 43.118
Taestivum_Traes_4BL_10F325B7E.2 Traes_4BL_10F325B7E.2 PAC:32024838	High	No	1158		Get ORF Coding potential... Type: noncoding Potential: -0.036 Folding energies... MFEI: -24.732 AMFE: -0.560 GC content %: 44.128
Taestivum_Traes_4BL_10F325B7E.3 Traes_4BL_10F325B7E.3 PAC:32024839	High	No	1080		Get ORF Coding potential... Type: noncoding Potential: -0.063 Folding energies... MFEI: -23.898 AMFE: -0.546 GC content %: 43.796
Taestivum_Traes_4BL_10F325B7E.4 Traes_4BL_10F325B7E.4 PAC:32024841	High	No	1563		Get ORF Coding potential... Type: noncoding Potential: -0.104 Folding energies... MFEI: -25.925 AMFE: -0.610 GC content %: 42.482

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).