GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BL_155D927E3 Traes_4BL_155D927E3	ta_iwgsc_4bl_v1_6985085	11705	15281	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BL_155D927E3.2 Traes_4BL_155D927E3.2 PAC:31881932	Low	No	1825		Get ORF Coding potential... Type: noncoding Potential: -0.889 Folding energies... MFEI: -30.175 AMFE: -0.633 GC content %: 47.671
Taestivum_Traes_4BL_155D927E3.20 Traes_4BL_155D927E3.20 PAC:31881951	Low	No	2286		Get ORF Coding potential... Type: noncoding Potential: -0.919 Folding energies... MFEI: -30.923 AMFE: -0.655 GC content %: 47.244
Taestivum_Traes_4BL_155D927E3.21 Traes_4BL_155D927E3.21 PAC:31881952	Low	No	2346		Get ORF Coding potential... Type: noncoding Potential: -0.118 Folding energies... MFEI: -31.014 AMFE: -0.658 GC content %: 47.101
Taestivum_Traes_4BL_155D927E3.7 Traes_4BL_155D927E3.7 PAC:31881936	Low	No	2072		Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -31.781 AMFE: -0.657 GC content %: 48.407

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).