Gene
Taestivum Traes 4BL 17DACCC41
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BL_17DACCC41 Traes_4BL_17DACCC41 |
ta_iwgsc_4bl_v1_6999275 | 1766 | 6261 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BL_17DACCC41.1 Traes_4BL_17DACCC41.1 PAC:31778012 |
High | No | 1075 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -28.819 AMFE: -0.648 GC content %: 44.465 | |
| Taestivum_Traes_4BL_17DACCC41.2 Traes_4BL_17DACCC41.2 PAC:31778010 |
High | No | 1400 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -30.307 AMFE: -0.653 GC content %: 46.429 | |
| Taestivum_Traes_4BL_17DACCC41.3 Traes_4BL_17DACCC41.3 PAC:31778011 |
High | No | 1095 | Get ORF Coding potential... Type: noncoding Potential: -0.814 Folding energies... MFEI: -26.068 AMFE: -0.626 GC content %: 41.644 | |
| Taestivum_Traes_4BL_17DACCC41.4 Traes_4BL_17DACCC41.4 PAC:31778013 |
High | No | 1284 | Get ORF Coding potential... Type: noncoding Potential: -0.844 Folding energies... MFEI: -29.611 AMFE: -0.640 GC content %: 46.262 | |
| Taestivum_Traes_4BL_17DACCC41.5 Traes_4BL_17DACCC41.5 PAC:31778014 |
High | No | 1188 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -32.458 AMFE: -0.667 GC content %: 48.653 | |
| Taestivum_Traes_4BL_17DACCC41.6 Traes_4BL_17DACCC41.6 PAC:31778015 |
High | No | 609 | Get ORF Coding potential... Type: noncoding Potential: -0.976 Folding energies... MFEI: -33.087 AMFE: -0.634 GC content %: 52.217 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
