Gene
Taestivum Traes 4BL 28CEF77A9
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BL_28CEF77A9 Traes_4BL_28CEF77A9 |
ta_iwgsc_4bl_v1_7034973 | 1179 | 3893 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BL_28CEF77A9.1 Traes_4BL_28CEF77A9.1 PAC:31840707 |
Low | No | 1549 | Get ORF Coding potential... Type: noncoding Potential: -0.119 Folding energies... MFEI: -31.227 AMFE: -0.677 GC content %: 46.159 | |
| Taestivum_Traes_4BL_28CEF77A9.12 Traes_4BL_28CEF77A9.12 PAC:31840716 |
Low | No | 1713 | Get ORF Coding potential... Type: noncoding Potential: -0.029 Folding energies... MFEI: -31.938 AMFE: -0.651 GC content %: 49.095 | |
| Taestivum_Traes_4BL_28CEF77A9.13 Traes_4BL_28CEF77A9.13 PAC:31840715 |
Low | No | 1342 | Get ORF Coding potential... Type: noncoding Potential: -0.117 Folding energies... MFEI: -32.832 AMFE: -0.655 GC content %: 50.149 | |
| Taestivum_Traes_4BL_28CEF77A9.14 Traes_4BL_28CEF77A9.14 PAC:31840719 |
High | No | 840 | Get ORF Coding potential... Type: noncoding Potential: -1.009 Folding energies... MFEI: -35.464 AMFE: -0.659 GC content %: 53.810 | |
| Taestivum_Traes_4BL_28CEF77A9.15 Traes_4BL_28CEF77A9.15 PAC:31840718 |
Low | No | 1440 | Get ORF Coding potential... Type: noncoding Potential: -0.137 Folding energies... MFEI: -31.097 AMFE: -0.675 GC content %: 46.042 | |
| Taestivum_Traes_4BL_28CEF77A9.16 Traes_4BL_28CEF77A9.16 PAC:31840717 |
Low | No | 1655 | Get ORF Coding potential... Type: noncoding Potential: -0.163 Folding energies... MFEI: -32.054 AMFE: -0.647 GC content %: 49.547 | |
| Taestivum_Traes_4BL_28CEF77A9.2 Traes_4BL_28CEF77A9.2 PAC:31840705 |
Low | No | 1577 | Get ORF Coding potential... Type: noncoding Potential: -0.015 Folding energies... MFEI: -31.788 AMFE: -0.639 GC content %: 49.715 | |
| Taestivum_Traes_4BL_28CEF77A9.3 Traes_4BL_28CEF77A9.3 PAC:31840714 |
Low | No | 1321 | Get ORF Coding potential... Type: noncoding Potential: -0.084 Folding energies... MFEI: -31.241 AMFE: -0.664 GC content %: 47.086 | |
| Taestivum_Traes_4BL_28CEF77A9.4 Traes_4BL_28CEF77A9.4 PAC:31840710 |
Low | No | 1313 | Get ORF Coding potential... Type: noncoding Potential: -0.083 Folding energies... MFEI: -30.754 AMFE: -0.652 GC content %: 47.144 | |
| Taestivum_Traes_4BL_28CEF77A9.5 Traes_4BL_28CEF77A9.5 PAC:31840712 |
Low | No | 1316 | Get ORF Coding potential... Type: noncoding Potential: -0.084 Folding energies... MFEI: -30.805 AMFE: -0.682 GC content %: 45.137 | |
| Taestivum_Traes_4BL_28CEF77A9.6 Traes_4BL_28CEF77A9.6 PAC:31840709 |
Low | No | 1293 | Get ORF Coding potential... Type: noncoding Potential: -0.080 Folding energies... MFEI: -30.209 AMFE: -0.670 GC content %: 45.089 | |
| Taestivum_Traes_4BL_28CEF77A9.8 Traes_4BL_28CEF77A9.8 PAC:31840708 |
Low | No | 1699 | Get ORF Coding potential... Type: noncoding Potential: -0.028 Folding energies... MFEI: -31.813 AMFE: -0.646 GC content %: 49.264 | |
| Taestivum_Traes_4BL_28CEF77A9.9 Traes_4BL_28CEF77A9.9 PAC:31840706 |
Low | No | 1426 | Get ORF Coding potential... Type: noncoding Potential: -0.001 Folding energies... MFEI: -32.230 AMFE: -0.652 GC content %: 49.439 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
