Gene
Taestivum Traes 4BL 4BF23E0E4
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BL_4BF23E0E4 Traes_4BL_4BF23E0E4 |
ta_iwgsc_4bl_v1_7014734 | 3983 | 8110 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BL_4BF23E0E4.1 Traes_4BL_4BF23E0E4.1 PAC:31823812 |
High | No | 360 | Get ORF Coding potential... Type: noncoding Potential: -1.080 Folding energies... MFEI: -21.556 AMFE: -0.329 GC content %: 65.556 | |
| Taestivum_Traes_4BL_4BF23E0E4.10 Traes_4BL_4BF23E0E4.10 PAC:31823822 |
High | No | 1407 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -28.479 AMFE: -0.572 GC content %: 49.751 | |
| Taestivum_Traes_4BL_4BF23E0E4.11 Traes_4BL_4BF23E0E4.11 PAC:31823821 |
High | No | 1231 | Get ORF Coding potential... Type: noncoding Potential: -0.983 Folding energies... MFEI: -29.228 AMFE: -0.592 GC content %: 49.391 | |
| Taestivum_Traes_4BL_4BF23E0E4.12 Traes_4BL_4BF23E0E4.12 PAC:31823823 |
High | No | 971 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -28.847 AMFE: -0.605 GC content %: 47.683 | |
| Taestivum_Traes_4BL_4BF23E0E4.13 Traes_4BL_4BF23E0E4.13 PAC:31823824 |
High | No | 759 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -28.656 AMFE: -0.594 GC content %: 48.221 | |
| Taestivum_Traes_4BL_4BF23E0E4.14 Traes_4BL_4BF23E0E4.14 PAC:31823825 |
High | No | 626 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -30.351 AMFE: -0.607 GC content %: 50.000 | |
| Taestivum_Traes_4BL_4BF23E0E4.15 Traes_4BL_4BF23E0E4.15 PAC:31823826 |
High | No | 728 | Get ORF Coding potential... Type: noncoding Potential: -0.989 Folding energies... MFEI: -30.096 AMFE: -0.597 GC content %: 50.412 | |
| Taestivum_Traes_4BL_4BF23E0E4.16 Traes_4BL_4BF23E0E4.16 PAC:31823827 |
High | No | 700 | Get ORF Coding potential... Type: noncoding Potential: -1.196 Folding energies... MFEI: -24.557 AMFE: -0.632 GC content %: 38.857 | |
| Taestivum_Traes_4BL_4BF23E0E4.17 Traes_4BL_4BF23E0E4.17 PAC:31823828 |
High | No | 844 | Get ORF Coding potential... Type: noncoding Potential: -1.072 Folding energies... MFEI: -25.095 AMFE: -0.638 GC content %: 39.336 | |
| Taestivum_Traes_4BL_4BF23E0E4.2 Traes_4BL_4BF23E0E4.2 PAC:31823813 |
High | No | 1115 | Get ORF Coding potential... Type: noncoding Potential: -1.033 Folding energies... MFEI: -29.776 AMFE: -0.557 GC content %: 53.453 | |
| Taestivum_Traes_4BL_4BF23E0E4.3 Traes_4BL_4BF23E0E4.3 PAC:31823815 |
High | No | 1020 | Get ORF Coding potential... Type: noncoding Potential: -1.081 Folding energies... MFEI: -24.941 AMFE: -0.656 GC content %: 38.039 | |
| Taestivum_Traes_4BL_4BF23E0E4.4 Traes_4BL_4BF23E0E4.4 PAC:31823814 |
High | No | 839 | Get ORF Coding potential... Type: noncoding Potential: -1.117 Folding energies... MFEI: -24.946 AMFE: -0.638 GC content %: 39.094 | |
| Taestivum_Traes_4BL_4BF23E0E4.5 Traes_4BL_4BF23E0E4.5 PAC:31823816 |
High | No | 931 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -30.075 AMFE: -0.571 GC content %: 52.632 | |
| Taestivum_Traes_4BL_4BF23E0E4.6 Traes_4BL_4BF23E0E4.6 PAC:31823817 |
High | No | 1227 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -30.815 AMFE: -0.633 GC content %: 48.655 | |
| Taestivum_Traes_4BL_4BF23E0E4.7 Traes_4BL_4BF23E0E4.7 PAC:31823818 |
High | No | 1297 | Get ORF Coding potential... Type: noncoding Potential: -1.056 Folding energies... MFEI: -28.743 AMFE: -0.577 GC content %: 49.807 | |
| Taestivum_Traes_4BL_4BF23E0E4.8 Traes_4BL_4BF23E0E4.8 PAC:31823820 |
High | No | 1072 | Get ORF Coding potential... Type: noncoding Potential: -0.962 Folding energies... MFEI: -29.627 AMFE: -0.597 GC content %: 49.627 | |
| Taestivum_Traes_4BL_4BF23E0E4.9 Traes_4BL_4BF23E0E4.9 PAC:31823819 |
High | No | 1060 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -29.698 AMFE: -0.595 GC content %: 49.906 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
