GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BL_5AF52F028 Traes_4BL_5AF52F028	ta_iwgsc_4bl_v1_7041808	1703	4335	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BL_5AF52F028.3 Traes_4BL_5AF52F028.3 PAC:31871197	High	No	374		Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -24.254 AMFE: -0.498 GC content %: 48.663
Taestivum_Traes_4BL_5AF52F028.4 Traes_4BL_5AF52F028.4 PAC:31871198	High	No	351		Get ORF Coding potential... Type: noncoding Potential: -1.141 Folding energies... MFEI: -20.003 AMFE: -0.453 GC content %: 44.160

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).