GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BL_63E59C0EE Traes_4BL_63E59C0EE	ta_iwgsc_4bl_v1_7037520	6211	8567	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BL_63E59C0EE.3 Traes_4BL_63E59C0EE.3 PAC:31760803	Low	No	680		Get ORF Coding potential... Type: noncoding Potential: -0.784 Folding energies... MFEI: -32.118 AMFE: -0.615 GC content %: 52.206
Taestivum_Traes_4BL_63E59C0EE.5 Traes_4BL_63E59C0EE.5 PAC:31760806	Low	No	780		Get ORF Coding potential... Type: noncoding Potential: -1.315 Folding energies... MFEI: -24.846 AMFE: -0.650 GC content %: 38.205
Taestivum_Traes_4BL_63E59C0EE.6 Traes_4BL_63E59C0EE.6 PAC:31760807	Low	No	764		Get ORF Coding potential... Type: noncoding Potential: -1.015 Folding energies... MFEI: -32.709 AMFE: -0.634 GC content %: 51.571

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).