Gene
Taestivum Traes 4BL 7741D3F9A
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BL_7741D3F9A Traes_4BL_7741D3F9A |
ta_iwgsc_4bl_v1_7011907 | 2801 | 8073 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BL_7741D3F9A.1 Traes_4BL_7741D3F9A.1 PAC:31907263 |
High | No | 2528 | Get ORF Coding potential... Type: noncoding Potential: -1.024 Folding energies... MFEI: -25.459 AMFE: -0.677 GC content %: 37.579 | |
| Taestivum_Traes_4BL_7741D3F9A.10 Traes_4BL_7741D3F9A.10 PAC:31907254 |
High | No | 3136 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -29.684 AMFE: -0.667 GC content %: 44.515 | |
| Taestivum_Traes_4BL_7741D3F9A.11 Traes_4BL_7741D3F9A.11 PAC:31907256 |
High | No | 2555 | Get ORF Coding potential... Type: noncoding Potential: -0.869 Folding energies... MFEI: -25.796 AMFE: -0.676 GC content %: 38.160 | |
| Taestivum_Traes_4BL_7741D3F9A.12 Traes_4BL_7741D3F9A.12 PAC:31907257 |
High | No | 3222 | Get ORF Coding potential... Type: noncoding Potential: -1.044 Folding energies... MFEI: -30.161 AMFE: -0.673 GC content %: 44.817 | |
| Taestivum_Traes_4BL_7741D3F9A.13 Traes_4BL_7741D3F9A.13 PAC:31907258 |
High | No | 3707 | Get ORF Coding potential... Type: noncoding Potential: -1.075 Folding energies... MFEI: -29.415 AMFE: -0.681 GC content %: 43.162 | |
| Taestivum_Traes_4BL_7741D3F9A.14 Traes_4BL_7741D3F9A.14 PAC:31907262 |
Low | No | 2114 | Get ORF Coding potential... Type: noncoding Potential: -1.002 Folding energies... MFEI: -25.473 AMFE: -0.671 GC content %: 37.938 | |
| Taestivum_Traes_4BL_7741D3F9A.15 Traes_4BL_7741D3F9A.15 PAC:31907261 |
High | No | 4026 | Get ORF Coding potential... Type: noncoding Potential: -0.917 Folding energies... MFEI: -29.066 AMFE: -0.680 GC content %: 42.722 | |
| Taestivum_Traes_4BL_7741D3F9A.16 Traes_4BL_7741D3F9A.16 PAC:31907260 |
High | No | 2843 | Get ORF Coding potential... Type: noncoding Potential: -1.037 Folding energies... MFEI: -29.413 AMFE: -0.662 GC content %: 44.460 | |
| Taestivum_Traes_4BL_7741D3F9A.17 Traes_4BL_7741D3F9A.17 PAC:31907264 |
High | No | 3937 | Get ORF Coding potential... Type: noncoding Potential: -1.066 Folding energies... MFEI: -28.854 AMFE: -0.675 GC content %: 42.774 | |
| Taestivum_Traes_4BL_7741D3F9A.18 Traes_4BL_7741D3F9A.18 PAC:31907259 |
High | No | 2636 | Get ORF Coding potential... Type: noncoding Potential: -0.873 Folding energies... MFEI: -26.730 AMFE: -0.684 GC content %: 39.074 | |
| Taestivum_Traes_4BL_7741D3F9A.19 Traes_4BL_7741D3F9A.19 PAC:31907267 |
Low | No | 3485 | Get ORF Coding potential... Type: noncoding Potential: -0.903 Folding energies... MFEI: -29.154 AMFE: -0.679 GC content %: 42.956 | |
| Taestivum_Traes_4BL_7741D3F9A.2 Traes_4BL_7741D3F9A.2 PAC:31907249 |
Low | No | 1699 | Get ORF Coding potential... Type: noncoding Potential: -0.990 Folding energies... MFEI: -33.749 AMFE: -0.668 GC content %: 50.500 | |
| Taestivum_Traes_4BL_7741D3F9A.20 Traes_4BL_7741D3F9A.20 PAC:31907266 |
High | No | 2707 | Get ORF Coding potential... Type: noncoding Potential: -1.032 Folding energies... MFEI: -29.239 AMFE: -0.668 GC content %: 43.738 | |
| Taestivum_Traes_4BL_7741D3F9A.21 Traes_4BL_7741D3F9A.21 PAC:31907265 |
Low | No | 3016 | Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -29.731 AMFE: -0.667 GC content %: 44.595 | |
| Taestivum_Traes_4BL_7741D3F9A.22 Traes_4BL_7741D3F9A.22 PAC:31907268 |
High | No | 3272 | Get ORF Coding potential... Type: noncoding Potential: -0.897 Folding energies... MFEI: -29.884 AMFE: -0.682 GC content %: 43.796 | |
| Taestivum_Traes_4BL_7741D3F9A.23 Traes_4BL_7741D3F9A.23 PAC:31907269 |
High | No | 2751 | Get ORF Coding potential... Type: noncoding Potential: -1.302 Folding energies... MFEI: -30.258 AMFE: -0.690 GC content %: 43.839 | |
| Taestivum_Traes_4BL_7741D3F9A.3 Traes_4BL_7741D3F9A.3 PAC:31907247 |
Low | No | 2801 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -29.011 AMFE: -0.654 GC content %: 44.341 | |
| Taestivum_Traes_4BL_7741D3F9A.4 Traes_4BL_7741D3F9A.4 PAC:31907248 |
Low | No | 2913 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -29.911 AMFE: -0.669 GC content %: 44.731 | |
| Taestivum_Traes_4BL_7741D3F9A.5 Traes_4BL_7741D3F9A.5 PAC:31907250 |
Low | No | 2927 | Get ORF Coding potential... Type: noncoding Potential: -0.885 Folding energies... MFEI: -30.089 AMFE: -0.669 GC content %: 44.995 | |
| Taestivum_Traes_4BL_7741D3F9A.6 Traes_4BL_7741D3F9A.6 PAC:31907253 |
High | No | 3156 | Get ORF Coding potential... Type: noncoding Potential: -0.893 Folding energies... MFEI: -29.398 AMFE: -0.665 GC content %: 44.233 | |
| Taestivum_Traes_4BL_7741D3F9A.7 Traes_4BL_7741D3F9A.7 PAC:31907252 |
High | No | 3184 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -28.970 AMFE: -0.667 GC content %: 43.405 | |
| Taestivum_Traes_4BL_7741D3F9A.8 Traes_4BL_7741D3F9A.8 PAC:31907255 |
High | No | 3187 | Get ORF Coding potential... Type: noncoding Potential: -1.048 Folding energies... MFEI: -28.936 AMFE: -0.666 GC content %: 43.426 | |
| Taestivum_Traes_4BL_7741D3F9A.9 Traes_4BL_7741D3F9A.9 PAC:31907251 |
High | No | 3185 | Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -29.309 AMFE: -0.666 GC content %: 43.987 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
