GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BL_7A2840E8B Traes_4BL_7A2840E8B	ta_iwgsc_4bl_v1_6838433	4	4735	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BL_7A2840E8B.1 Traes_4BL_7A2840E8B.1 PAC:31923230	Low	No	1085		Get ORF Coding potential... Type: noncoding Potential: -0.945 Folding energies... MFEI: -29.078 AMFE: -0.681 GC content %: 42.673
Taestivum_Traes_4BL_7A2840E8B.2 Traes_4BL_7A2840E8B.2 PAC:31923229	Low	No	1226		Get ORF Coding potential... Type: noncoding Potential: -0.180 Folding energies... MFEI: -29.396 AMFE: -0.666 GC content %: 44.127
Taestivum_Traes_4BL_7A2840E8B.3 Traes_4BL_7A2840E8B.3 PAC:31923231	High	No	1315		Get ORF Coding potential... Type: noncoding Potential: -1.162 Folding energies... MFEI: -26.867 AMFE: -0.632 GC content %: 42.510

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).