Gene
Taestivum Traes 4BL 848EA04E7
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BL_848EA04E7 Traes_4BL_848EA04E7 |
ta_iwgsc_4bl_v1_7032291 | 1 | 3251 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BL_848EA04E7.1 Traes_4BL_848EA04E7.1 PAC:31886229 |
Low | No | 845 | Get ORF Coding potential... Type: noncoding Potential: -0.880 Folding energies... MFEI: -40.083 AMFE: -0.684 GC content %: 58.580 | |
| Taestivum_Traes_4BL_848EA04E7.2 Traes_4BL_848EA04E7.2 PAC:31886224 |
Low | No | 832 | Get ORF Coding potential... Type: noncoding Potential: -0.807 Folding energies... MFEI: -40.108 AMFE: -0.687 GC content %: 58.413 | |
| Taestivum_Traes_4BL_848EA04E7.3 Traes_4BL_848EA04E7.3 PAC:31886226 |
Low | No | 760 | Get ORF Coding potential... Type: noncoding Potential: -0.774 Folding energies... MFEI: -40.882 AMFE: -0.689 GC content %: 59.342 | |
| Taestivum_Traes_4BL_848EA04E7.4 Traes_4BL_848EA04E7.4 PAC:31886225 |
Low | No | 1561 | Get ORF Coding potential... Type: noncoding Potential: -0.985 Folding energies... MFEI: -32.377 AMFE: -0.677 GC content %: 47.854 | |
| Taestivum_Traes_4BL_848EA04E7.5 Traes_4BL_848EA04E7.5 PAC:31886227 |
Low | No | 753 | Get ORF Coding potential... Type: noncoding Potential: -0.773 Folding energies... MFEI: -40.637 AMFE: -0.685 GC content %: 59.363 | |
| Taestivum_Traes_4BL_848EA04E7.6 Traes_4BL_848EA04E7.6 PAC:31886228 |
Low | No | 845 | Get ORF Coding potential... Type: noncoding Potential: -0.468 Folding energies... MFEI: -39.941 AMFE: -0.682 GC content %: 58.580 | |
| Taestivum_Traes_4BL_848EA04E7.7 Traes_4BL_848EA04E7.7 PAC:31886230 |
Low | No | 1646 | Get ORF Coding potential... Type: noncoding Potential: -0.913 Folding energies... MFEI: -32.072 AMFE: -0.667 GC content %: 48.056 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
