Gene
Taestivum Traes 4BL 991DCDE3A
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BL_991DCDE3A Traes_4BL_991DCDE3A |
ta_iwgsc_4bl_v1_6999518 | 487 | 14240 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BL_991DCDE3A.1 Traes_4BL_991DCDE3A.1 PAC:31908227 |
High | No | 920 | Get ORF Coding potential... Type: noncoding Potential: -1.168 Folding energies... MFEI: -32.207 AMFE: -0.660 GC content %: 48.804 | |
| Taestivum_Traes_4BL_991DCDE3A.20 Traes_4BL_991DCDE3A.20 PAC:31908222 |
Low | No | 1662 | Get ORF Coding potential... Type: noncoding Potential: -1.235 Folding energies... MFEI: -32.461 AMFE: -0.652 GC content %: 49.759 | |
| Taestivum_Traes_4BL_991DCDE3A.21 Traes_4BL_991DCDE3A.21 PAC:31908223 |
Low | No | 1640 | Get ORF Coding potential... Type: noncoding Potential: -1.241 Folding energies... MFEI: -32.665 AMFE: -0.660 GC content %: 49.512 | |
| Taestivum_Traes_4BL_991DCDE3A.22 Traes_4BL_991DCDE3A.22 PAC:31908225 |
Low | No | 1722 | Get ORF Coding potential... Type: noncoding Potential: -1.246 Folding energies... MFEI: -32.973 AMFE: -0.658 GC content %: 50.116 | |
| Taestivum_Traes_4BL_991DCDE3A.23 Traes_4BL_991DCDE3A.23 PAC:31908226 |
High | No | 1539 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -32.677 AMFE: -0.661 GC content %: 49.448 | |
| Taestivum_Traes_4BL_991DCDE3A.24 Traes_4BL_991DCDE3A.24 PAC:31908224 |
High | No | 1552 | Get ORF Coding potential... Type: noncoding Potential: -1.236 Folding energies... MFEI: -32.822 AMFE: -0.664 GC content %: 49.420 | |
| Taestivum_Traes_4BL_991DCDE3A.25 Traes_4BL_991DCDE3A.25 PAC:31908228 |
High | No | 3370 | Get ORF Coding potential... Type: noncoding Potential: -1.124 Folding energies... MFEI: -31.884 AMFE: -0.677 GC content %: 47.122 | |
| Taestivum_Traes_4BL_991DCDE3A.26 Traes_4BL_991DCDE3A.26 PAC:31908229 |
Low | No | 1834 | Get ORF Coding potential... Type: noncoding Potential: -1.243 Folding energies... MFEI: -32.568 AMFE: -0.651 GC content %: 50.055 | |
| Taestivum_Traes_4BL_991DCDE3A.27 Traes_4BL_991DCDE3A.27 PAC:31908230 |
Low | No | 1729 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -32.522 AMFE: -0.653 GC content %: 49.798 | |
| Taestivum_Traes_4BL_991DCDE3A.28 Traes_4BL_991DCDE3A.28 PAC:31908231 |
High | No | 316 | Get ORF Coding potential... Type: noncoding Potential: -1.276 Folding energies... MFEI: -29.462 AMFE: -0.613 GC content %: 48.101 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
