Gene
Taestivum Traes 4BL AB7AABC21
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BL_AB7AABC21 Traes_4BL_AB7AABC21 |
ta_iwgsc_4bl_v1_6988637 | 104 | 5479 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BL_AB7AABC21.1 Traes_4BL_AB7AABC21.1 PAC:31944612 |
Low | No | 1214 | Get ORF Coding potential... Type: noncoding Potential: -0.249 Folding energies... MFEI: -26.153 AMFE: -0.609 GC content %: 42.916 | |
| Taestivum_Traes_4BL_AB7AABC21.10 Traes_4BL_AB7AABC21.10 PAC:31944613 |
Low | No | 1344 | Get ORF Coding potential... Type: noncoding Potential: -0.397 Folding energies... MFEI: -25.469 AMFE: -0.596 GC content %: 42.708 | |
| Taestivum_Traes_4BL_AB7AABC21.11 Traes_4BL_AB7AABC21.11 PAC:31944618 |
Low | No | 1241 | Get ORF Coding potential... Type: noncoding Potential: -0.442 Folding energies... MFEI: -26.068 AMFE: -0.602 GC content %: 43.272 | |
| Taestivum_Traes_4BL_AB7AABC21.12 Traes_4BL_AB7AABC21.12 PAC:31944617 |
Low | No | 1102 | Get ORF Coding potential... Type: noncoding Potential: -0.420 Folding energies... MFEI: -26.588 AMFE: -0.603 GC content %: 44.102 | |
| Taestivum_Traes_4BL_AB7AABC21.13 Traes_4BL_AB7AABC21.13 PAC:31944619 |
Low | No | 1265 | Get ORF Coding potential... Type: noncoding Potential: -0.258 Folding energies... MFEI: -26.150 AMFE: -0.607 GC content %: 43.083 | |
| Taestivum_Traes_4BL_AB7AABC21.14 Traes_4BL_AB7AABC21.14 PAC:31944616 |
Low | No | 1303 | Get ORF Coding potential... Type: noncoding Potential: -0.269 Folding energies... MFEI: -25.257 AMFE: -0.587 GC content %: 43.054 | |
| Taestivum_Traes_4BL_AB7AABC21.15 Traes_4BL_AB7AABC21.15 PAC:31944620 |
Low | No | 1541 | Get ORF Coding potential... Type: noncoding Potential: -0.496 Folding energies... MFEI: -23.232 AMFE: -0.594 GC content %: 39.130 | |
| Taestivum_Traes_4BL_AB7AABC21.2 Traes_4BL_AB7AABC21.2 PAC:31944607 |
Low | No | 1310 | Get ORF Coding potential... Type: noncoding Potential: -0.270 Folding energies... MFEI: -25.954 AMFE: -0.605 GC content %: 42.901 | |
| Taestivum_Traes_4BL_AB7AABC21.3 Traes_4BL_AB7AABC21.3 PAC:31944606 |
Low | No | 1319 | Get ORF Coding potential... Type: noncoding Potential: -0.271 Folding energies... MFEI: -26.315 AMFE: -0.613 GC content %: 42.911 | |
| Taestivum_Traes_4BL_AB7AABC21.4 Traes_4BL_AB7AABC21.4 PAC:31944608 |
Low | No | 1330 | Get ORF Coding potential... Type: noncoding Potential: -0.273 Folding energies... MFEI: -24.699 AMFE: -0.582 GC content %: 42.406 | |
| Taestivum_Traes_4BL_AB7AABC21.5 Traes_4BL_AB7AABC21.5 PAC:31944609 |
Low | No | 1218 | Get ORF Coding potential... Type: noncoding Potential: -0.250 Folding energies... MFEI: -26.190 AMFE: -0.609 GC content %: 43.021 | |
| Taestivum_Traes_4BL_AB7AABC21.6 Traes_4BL_AB7AABC21.6 PAC:31944611 |
Low | No | 1199 | Get ORF Coding potential... Type: noncoding Potential: -0.396 Folding energies... MFEI: -26.539 AMFE: -0.638 GC content %: 41.618 | |
| Taestivum_Traes_4BL_AB7AABC21.7 Traes_4BL_AB7AABC21.7 PAC:31944615 |
Low | No | 1287 | Get ORF Coding potential... Type: noncoding Potential: -0.262 Folding energies... MFEI: -25.470 AMFE: -0.620 GC content %: 41.103 | |
| Taestivum_Traes_4BL_AB7AABC21.8 Traes_4BL_AB7AABC21.8 PAC:31944610 |
Low | No | 1270 | Get ORF Coding potential... Type: noncoding Potential: -0.259 Folding energies... MFEI: -26.205 AMFE: -0.612 GC content %: 42.835 | |
| Taestivum_Traes_4BL_AB7AABC21.9 Traes_4BL_AB7AABC21.9 PAC:31944614 |
Low | No | 1057 | Get ORF Coding potential... Type: noncoding Potential: -0.365 Folding energies... MFEI: -26.708 AMFE: -0.608 GC content %: 43.898 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
