GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BL_C95C95B9D Traes_4BL_C95C95B9D	ta_iwgsc_4bl_v1_7016550	4438	12586	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BL_C95C95B9D.4 Traes_4BL_C95C95B9D.4 PAC:31910145	High	No	455		Get ORF Coding potential... Type: noncoding Potential: -1.367 Folding energies... MFEI: -22.484 AMFE: -0.553 GC content %: 40.659
Taestivum_Traes_4BL_C95C95B9D.5 Traes_4BL_C95C95B9D.5 PAC:31910146	High	No	622		Get ORF Coding potential... Type: noncoding Potential: -1.142 Folding energies... MFEI: -25.756 AMFE: -0.596 GC content %: 43.248
Taestivum_Traes_4BL_C95C95B9D.7 Traes_4BL_C95C95B9D.7 PAC:31910147	High	No	444		Get ORF Coding potential... Type: noncoding Potential: -1.364 Folding energies... MFEI: -21.712 AMFE: -0.545 GC content %: 39.865

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).