Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_4BL_CCCFCB411 Traes_4BL_CCCFCB411 |
ta_iwgsc_4bl_v1_7037110 | 405 | 3619 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_4BL_CCCFCB411.3 Traes_4BL_CCCFCB411.3 PAC:31889543 |
Low | No | 1097 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -28.724 AMFE: -0.602 GC content %: 47.675 | |
Taestivum_Traes_4BL_CCCFCB411.4 Traes_4BL_CCCFCB411.4 PAC:31889544 |
Low | No | 1028 | Get ORF Coding potential... Type: noncoding Potential: -0.662 Folding energies... MFEI: -29.105 AMFE: -0.595 GC content %: 48.930 | |
Taestivum_Traes_4BL_CCCFCB411.5 Traes_4BL_CCCFCB411.5 PAC:31889545 |
Low | No | 749 | Get ORF Coding potential... Type: noncoding Potential: -0.623 Folding energies... MFEI: -28.398 AMFE: -0.604 GC content %: 46.996 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_4BL_CCCFCB411.4 | RepBase (RepeatMasker) | 2014-01-31 | REP1_SB | |
Taestivum_Traes_4BL_CCCFCB411.5 | RepBase (RepeatMasker) | 2014-01-31 | REP1_SB | |
Taestivum_Traes_4BL_CCCFCB411.3 | RepBase (RepeatMasker) | 2014-01-31 | REP1_SB |