Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_4BL_CCFD4F704 Traes_4BL_CCFD4F704 |
ta_iwgsc_4bl_v1_6991325 | 1786 | 2433 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_4BL_CCFD4F704.1 Traes_4BL_CCFD4F704.1 PAC:31736444 |
Low | No | 294 | Get ORF Coding potential... Type: noncoding Potential: -0.876 Folding energies... MFEI: -27.619 AMFE: -0.650 GC content %: 42.517 | |
Taestivum_Traes_4BL_CCFD4F704.3 Traes_4BL_CCFD4F704.3 PAC:31736445 |
Low | No | 288 | Get ORF Coding potential... Type: noncoding Potential: -0.769 Folding energies... MFEI: -30.833 AMFE: -0.668 GC content %: 46.181 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_4BL_CCFD4F704.1 | RepBase (RepeatMasker) | 2014-01-31 | L1-8_SBi | |
Taestivum_Traes_4BL_CCFD4F704.3 | RepBase (RepeatMasker) | 2014-01-31 | LINE1-34_SBi |