Gene
Taestivum Traes 4BL DA9E43953
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BL_DA9E43953 Traes_4BL_DA9E43953 |
ta_iwgsc_4bl_v1_7034275 | 4 | 2859 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BL_DA9E43953.1 Traes_4BL_DA9E43953.1 PAC:31846094 |
Low | No | 1822 | Get ORF Coding potential... Type: noncoding Potential: -0.229 Folding energies... MFEI: -27.464 AMFE: -0.663 GC content %: 41.438 | |
| Taestivum_Traes_4BL_DA9E43953.2 Traes_4BL_DA9E43953.2 PAC:31846088 |
Low | No | 2088 | Get ORF Coding potential... Type: noncoding Potential: -0.250 Folding energies... MFEI: -27.452 AMFE: -0.652 GC content %: 42.098 | |
| Taestivum_Traes_4BL_DA9E43953.3 Traes_4BL_DA9E43953.3 PAC:31846089 |
Low | No | 1927 | Get ORF Coding potential... Type: noncoding Potential: -0.254 Folding energies... MFEI: -28.127 AMFE: -0.665 GC content %: 42.294 | |
| Taestivum_Traes_4BL_DA9E43953.4 Traes_4BL_DA9E43953.4 PAC:31846090 |
High | No | 1799 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -25.937 AMFE: -0.681 GC content %: 38.077 | |
| Taestivum_Traes_4BL_DA9E43953.5 Traes_4BL_DA9E43953.5 PAC:31846092 |
Low | No | 1803 | Get ORF Coding potential... Type: noncoding Potential: -0.001 Folding energies... MFEI: -27.338 AMFE: -0.664 GC content %: 41.154 | |
| Taestivum_Traes_4BL_DA9E43953.6 Traes_4BL_DA9E43953.6 PAC:31846093 |
Low | No | 631 | Get ORF Coding potential... Type: noncoding Potential: -0.074 Folding energies... MFEI: -27.401 AMFE: -0.584 GC content %: 46.910 | |
| Taestivum_Traes_4BL_DA9E43953.7 Traes_4BL_DA9E43953.7 PAC:31846095 |
Low | No | 1904 | Get ORF Coding potential... Type: noncoding Potential: -0.240 Folding energies... MFEI: -27.631 AMFE: -0.663 GC content %: 41.649 | |
| Taestivum_Traes_4BL_DA9E43953.8 Traes_4BL_DA9E43953.8 PAC:31846091 |
Low | No | 2680 | Get ORF Coding potential... Type: noncoding Potential: -0.226 Folding energies... MFEI: -27.022 AMFE: -0.654 GC content %: 41.306 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
