Gene
Taestivum Traes 4BS 150B8BDE7
From GreeNC
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BS_150B8BDE7 Traes_4BS_150B8BDE7 |
ta_iwgsc_4bs_v1_4912545 | 17061 | 19481 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BS_150B8BDE7.1 Traes_4BS_150B8BDE7.1 PAC:31881253 |
Low | No | 716 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -24.120 AMFE: -0.581 GC content %: 41.480 | |
| Taestivum_Traes_4BS_150B8BDE7.10 Traes_4BS_150B8BDE7.10 PAC:31881263 |
Low | No | 2069 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -26.071 AMFE: -0.665 GC content %: 39.198 | |
| Taestivum_Traes_4BS_150B8BDE7.11 Traes_4BS_150B8BDE7.11 PAC:31881262 |
High | No | 1476 | Get ORF Coding potential... Type: noncoding Potential: -1.257 Folding energies... MFEI: -25.847 AMFE: -0.673 GC content %: 38.415 | |
| Taestivum_Traes_4BS_150B8BDE7.12 Traes_4BS_150B8BDE7.12 PAC:31881264 |
Low | No | 2065 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -26.223 AMFE: -0.670 GC content %: 39.128 | |
| Taestivum_Traes_4BS_150B8BDE7.13 Traes_4BS_150B8BDE7.13 PAC:31881265 |
High | No | 658 | Get ORF Coding potential... Type: noncoding Potential: -1.194 Folding energies... MFEI: -25.030 AMFE: -0.617 GC content %: 40.578 | |
| Taestivum_Traes_4BS_150B8BDE7.2 Traes_4BS_150B8BDE7.2 PAC:31881259 |
Low | No | 2329 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -25.827 AMFE: -0.665 GC content %: 38.858 | |
| Taestivum_Traes_4BS_150B8BDE7.3 Traes_4BS_150B8BDE7.3 PAC:31881255 |
Low | No | 2327 | Get ORF Coding potential... Type: noncoding Potential: -1.135 Folding energies... MFEI: -25.776 AMFE: -0.663 GC content %: 38.848 | |
| Taestivum_Traes_4BS_150B8BDE7.4 Traes_4BS_150B8BDE7.4 PAC:31881254 |
High | No | 1436 | Get ORF Coding potential... Type: noncoding Potential: -1.256 Folding energies... MFEI: -25.759 AMFE: -0.659 GC content %: 39.067 | |
| Taestivum_Traes_4BS_150B8BDE7.5 Traes_4BS_150B8BDE7.5 PAC:31881258 |
High | No | 1762 | Get ORF Coding potential... Type: noncoding Potential: -1.266 Folding energies... MFEI: -25.522 AMFE: -0.662 GC content %: 38.536 | |
| Taestivum_Traes_4BS_150B8BDE7.6 Traes_4BS_150B8BDE7.6 PAC:31881257 |
High | No | 1513 | Get ORF Coding potential... Type: noncoding Potential: -1.259 Folding energies... MFEI: -25.651 AMFE: -0.659 GC content %: 38.929 | |
| Taestivum_Traes_4BS_150B8BDE7.7 Traes_4BS_150B8BDE7.7 PAC:31881256 |
High | No | 1866 | Get ORF Coding potential... Type: noncoding Potential: -1.268 Folding energies... MFEI: -25.520 AMFE: -0.667 GC content %: 38.264 | |
| Taestivum_Traes_4BS_150B8BDE7.8 Traes_4BS_150B8BDE7.8 PAC:31881260 |
High | No | 1372 | Get ORF Coding potential... Type: noncoding Potential: -1.253 Folding energies... MFEI: -25.794 AMFE: -0.665 GC content %: 38.776 | |
| Taestivum_Traes_4BS_150B8BDE7.9 Traes_4BS_150B8BDE7.9 PAC:31881261 |
High | No | 1611 | Get ORF Coding potential... Type: noncoding Potential: -1.262 Folding energies... MFEI: -25.531 AMFE: -0.662 GC content %: 38.547 |
The lncRNAs from GreeNC have been analysed against the following databases: SwissProt, miRBase, Rfam, RepBase (RepeatMasker), NONCODE, and lncRNAdb. This table displays any association with these databases.
| Transcript alias | Database | Version | Hit | Evalue |
|---|---|---|---|---|
| Taestivum_Traes_4BS_150B8BDE7.2 | RepBase (RepeatMasker) | 2014-01-31 | Helitron2_ZM | |
| Taestivum_Traes_4BS_150B8BDE7.3 | RepBase (RepeatMasker) | 2014-01-31 | Helitron2_ZM | |
| Taestivum_Traes_4BS_150B8BDE7.1 | RepBase (RepeatMasker) | 2014-01-31 | Helitron2_ZM | |
| Taestivum_Traes_4BS_150B8BDE7.10 | RepBase (RepeatMasker) | 2014-01-31 | Helitron2_ZM | |
| Taestivum_Traes_4BS_150B8BDE7.12 | RepBase (RepeatMasker) | 2014-01-31 | Helitron2_ZM |
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
