Gene
Taestivum Traes 4BS 246DF1F56
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BS_246DF1F56 Traes_4BS_246DF1F56 |
ta_iwgsc_4bs_v1_4937973 | 7125 | 11783 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BS_246DF1F56.1 Traes_4BS_246DF1F56.1 PAC:32019210 |
High | No | 628 | Get ORF Coding potential... Type: noncoding Potential: -0.966 Folding energies... MFEI: -28.758 AMFE: -0.598 GC content %: 48.089 | |
| Taestivum_Traes_4BS_246DF1F56.10 Traes_4BS_246DF1F56.10 PAC:32019216 |
High | No | 704 | Get ORF Coding potential... Type: noncoding Potential: -0.428 Folding energies... MFEI: -28.352 AMFE: -0.610 GC content %: 46.449 | |
| Taestivum_Traes_4BS_246DF1F56.2 Traes_4BS_246DF1F56.2 PAC:32019209 |
High | No | 756 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -28.413 AMFE: -0.592 GC content %: 48.016 | |
| Taestivum_Traes_4BS_246DF1F56.3 Traes_4BS_246DF1F56.3 PAC:32019211 |
High | No | 1021 | Get ORF Coding potential... Type: noncoding Potential: -0.525 Folding energies... MFEI: -27.424 AMFE: -0.603 GC content %: 45.446 | |
| Taestivum_Traes_4BS_246DF1F56.4 Traes_4BS_246DF1F56.4 PAC:32019212 |
High | No | 1035 | Get ORF Coding potential... Type: noncoding Potential: -0.946 Folding energies... MFEI: -27.140 AMFE: -0.607 GC content %: 44.734 | |
| Taestivum_Traes_4BS_246DF1F56.5 Traes_4BS_246DF1F56.5 PAC:32019215 |
High | No | 891 | Get ORF Coding potential... Type: noncoding Potential: -0.449 Folding energies... MFEI: -27.969 AMFE: -0.576 GC content %: 48.597 | |
| Taestivum_Traes_4BS_246DF1F56.6 Traes_4BS_246DF1F56.6 PAC:32019217 |
High | No | 846 | Get ORF Coding potential... Type: noncoding Potential: -0.502 Folding energies... MFEI: -26.277 AMFE: -0.604 GC content %: 43.499 | |
| Taestivum_Traes_4BS_246DF1F56.7 Traes_4BS_246DF1F56.7 PAC:32019218 |
High | No | 817 | Get ORF Coding potential... Type: noncoding Potential: -0.440 Folding energies... MFEI: -28.188 AMFE: -0.594 GC content %: 47.491 | |
| Taestivum_Traes_4BS_246DF1F56.8 Traes_4BS_246DF1F56.8 PAC:32019213 |
High | No | 905 | Get ORF Coding potential... Type: noncoding Potential: -0.522 Folding energies... MFEI: -28.199 AMFE: -0.612 GC content %: 46.077 | |
| Taestivum_Traes_4BS_246DF1F56.9 Traes_4BS_246DF1F56.9 PAC:32019214 |
High | No | 1458 | Get ORF Coding potential... Type: noncoding Potential: -0.549 Folding energies... MFEI: -25.700 AMFE: -0.623 GC content %: 41.221 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
