GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BS_49CA61900 Traes_4BS_49CA61900	ta_iwgsc_4bs_v1_4912073	8	1381	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BS_49CA61900.1 Traes_4BS_49CA61900.1 PAC:31959452	High	No	970		Get ORF Coding potential... Type: noncoding Potential: -0.927 Folding energies... MFEI: -23.784 AMFE: -0.598 GC content %: 39.794
Taestivum_Traes_4BS_49CA61900.2 Traes_4BS_49CA61900.2 PAC:31959453	High	No	838		Get ORF Coding potential... Type: noncoding Potential: -1.005 Folding energies... MFEI: -24.165 AMFE: -0.610 GC content %: 39.618
Taestivum_Traes_4BS_49CA61900.3 Traes_4BS_49CA61900.3 PAC:31959454	High	No	1030		Get ORF Coding potential... Type: noncoding Potential: -0.935 Folding energies... MFEI: -24.650 AMFE: -0.609 GC content %: 40.485
Taestivum_Traes_4BS_49CA61900.4 Traes_4BS_49CA61900.4 PAC:31959455	High	No	990		Get ORF Coding potential... Type: noncoding Potential: -1.026 Folding energies... MFEI: -24.828 AMFE: -0.625 GC content %: 39.697

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).