Gene
Taestivum Traes 4BS 4D68DF20E
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BS_4D68DF20E Traes_4BS_4D68DF20E |
ta_iwgsc_4bs_v1_4946756 | 1502 | 7778 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BS_4D68DF20E.1 Traes_4BS_4D68DF20E.1 PAC:31902709 |
High | No | 1941 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -25.384 AMFE: -0.668 GC content %: 38.022 | |
| Taestivum_Traes_4BS_4D68DF20E.10 Traes_4BS_4D68DF20E.10 PAC:31902706 |
High | No | 2294 | Get ORF Coding potential... Type: noncoding Potential: -1.017 Folding energies... MFEI: -24.917 AMFE: -0.653 GC content %: 38.187 | |
| Taestivum_Traes_4BS_4D68DF20E.11 Traes_4BS_4D68DF20E.11 PAC:31902707 |
High | No | 1800 | Get ORF Coding potential... Type: noncoding Potential: -1.001 Folding energies... MFEI: -24.533 AMFE: -0.638 GC content %: 38.444 | |
| Taestivum_Traes_4BS_4D68DF20E.12 Traes_4BS_4D68DF20E.12 PAC:31902704 |
High | No | 2952 | Get ORF Coding potential... Type: noncoding Potential: -1.030 Folding energies... MFEI: -25.115 AMFE: -0.663 GC content %: 37.873 | |
| Taestivum_Traes_4BS_4D68DF20E.2 Traes_4BS_4D68DF20E.2 PAC:31902699 |
High | No | 1939 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -25.333 AMFE: -0.666 GC content %: 38.009 | |
| Taestivum_Traes_4BS_4D68DF20E.3 Traes_4BS_4D68DF20E.3 PAC:31902700 |
High | No | 1945 | Get ORF Coding potential... Type: noncoding Potential: -1.006 Folding energies... MFEI: -29.692 AMFE: -0.662 GC content %: 44.884 | |
| Taestivum_Traes_4BS_4D68DF20E.4 Traes_4BS_4D68DF20E.4 PAC:31902701 |
High | No | 2443 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -24.924 AMFE: -0.656 GC content %: 37.986 | |
| Taestivum_Traes_4BS_4D68DF20E.5 Traes_4BS_4D68DF20E.5 PAC:31902702 |
High | No | 1161 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -32.403 AMFE: -0.644 GC content %: 50.301 | |
| Taestivum_Traes_4BS_4D68DF20E.6 Traes_4BS_4D68DF20E.6 PAC:31902703 |
High | No | 2433 | Get ORF Coding potential... Type: noncoding Potential: -1.020 Folding energies... MFEI: -25.314 AMFE: -0.668 GC content %: 37.896 | |
| Taestivum_Traes_4BS_4D68DF20E.7 Traes_4BS_4D68DF20E.7 PAC:31902708 |
High | No | 1309 | Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -25.371 AMFE: -0.656 GC content %: 38.655 | |
| Taestivum_Traes_4BS_4D68DF20E.8 Traes_4BS_4D68DF20E.8 PAC:31902705 |
High | No | 1615 | Get ORF Coding potential... Type: noncoding Potential: -0.992 Folding energies... MFEI: -29.876 AMFE: -0.641 GC content %: 46.625 | |
| Taestivum_Traes_4BS_4D68DF20E.9 Traes_4BS_4D68DF20E.9 PAC:31902710 |
High | No | 1150 | Get ORF Coding potential... Type: noncoding Potential: -0.960 Folding energies... MFEI: -31.974 AMFE: -0.626 GC content %: 51.043 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
