GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BS_90E7AB48B Traes_4BS_90E7AB48B	ta_iwgsc_4bs_v1_4959033	527	976	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BS_90E7AB48B.1 Traes_4BS_90E7AB48B.1 PAC:31929115	Low	Yes	396		Get ORF Coding potential... Type: noncoding Potential: -0.723 Folding energies... MFEI: -48.990 AMFE: -0.711 GC content %: 68.939
Taestivum_Traes_4BS_90E7AB48B.2 Traes_4BS_90E7AB48B.2 PAC:31929114	Low	Yes	294		Get ORF Coding potential... Type: noncoding Potential: -0.973 Folding energies... MFEI: -56.293 AMFE: -0.736 GC content %: 76.531

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).