Gene
Taestivum Traes 4BS 928979F20
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BS_928979F20 Traes_4BS_928979F20 |
ta_iwgsc_4bs_v1_4938345 | 789 | 6263 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BS_928979F20.1 Traes_4BS_928979F20.1 PAC:31922133 |
High | No | 1990 | Get ORF Coding potential... Type: noncoding Potential: -1.051 Folding energies... MFEI: -26.764 AMFE: -0.662 GC content %: 40.452 | |
| Taestivum_Traes_4BS_928979F20.27 Traes_4BS_928979F20.27 PAC:31922130 |
High | No | 1774 | Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -28.326 AMFE: -0.669 GC content %: 42.334 | |
| Taestivum_Traes_4BS_928979F20.28 Traes_4BS_928979F20.28 PAC:31922132 |
High | No | 911 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -27.278 AMFE: -0.621 GC content %: 43.908 | |
| Taestivum_Traes_4BS_928979F20.29 Traes_4BS_928979F20.29 PAC:31922131 |
High | No | 1314 | Get ORF Coding potential... Type: noncoding Potential: -1.016 Folding energies... MFEI: -29.170 AMFE: -0.653 GC content %: 44.673 | |
| Taestivum_Traes_4BS_928979F20.33 Traes_4BS_928979F20.33 PAC:31922138 |
High | No | 1487 | Get ORF Coding potential... Type: noncoding Potential: -1.217 Folding energies... MFEI: -29.576 AMFE: -0.669 GC content %: 44.183 | |
| Taestivum_Traes_4BS_928979F20.34 Traes_4BS_928979F20.34 PAC:31922139 |
High | No | 1044 | Get ORF Coding potential... Type: noncoding Potential: -1.132 Folding energies... MFEI: -32.385 AMFE: -0.667 GC content %: 48.563 | |
| Taestivum_Traes_4BS_928979F20.35 Traes_4BS_928979F20.35 PAC:31922140 |
High | No | 1990 | Get ORF Coding potential... Type: noncoding Potential: -1.203 Folding energies... MFEI: -27.216 AMFE: -0.673 GC content %: 40.452 | |
| Taestivum_Traes_4BS_928979F20.36 Traes_4BS_928979F20.36 PAC:31922142 |
High | No | 1199 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -29.867 AMFE: -0.650 GC content %: 45.955 | |
| Taestivum_Traes_4BS_928979F20.37 Traes_4BS_928979F20.37 PAC:31922141 |
High | No | 1358 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -29.190 AMFE: -0.645 GC content %: 45.287 | |
| Taestivum_Traes_4BS_928979F20.38 Traes_4BS_928979F20.38 PAC:31922143 |
High | No | 1407 | Get ORF Coding potential... Type: noncoding Potential: -1.133 Folding energies... MFEI: -28.934 AMFE: -0.656 GC content %: 44.136 | |
| Taestivum_Traes_4BS_928979F20.39 Traes_4BS_928979F20.39 PAC:31922144 |
High | No | 2123 | Get ORF Coding potential... Type: noncoding Potential: -1.228 Folding energies... MFEI: -26.764 AMFE: -0.661 GC content %: 40.462 | |
| Taestivum_Traes_4BS_928979F20.40 Traes_4BS_928979F20.40 PAC:31922145 |
High | No | 1352 | Get ORF Coding potential... Type: noncoding Potential: -1.126 Folding energies... MFEI: -29.549 AMFE: -0.658 GC content %: 44.896 | |
| Taestivum_Traes_4BS_928979F20.41 Traes_4BS_928979F20.41 PAC:31922146 |
High | No | 1391 | Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -29.676 AMFE: -0.662 GC content %: 44.860 | |
| Taestivum_Traes_4BS_928979F20.42 Traes_4BS_928979F20.42 PAC:31922147 |
High | No | 1296 | Get ORF Coding potential... Type: noncoding Potential: -1.238 Folding energies... MFEI: -28.426 AMFE: -0.649 GC content %: 43.827 | |
| Taestivum_Traes_4BS_928979F20.43 Traes_4BS_928979F20.43 PAC:31922134 |
High | No | 1767 | Get ORF Coding potential... Type: noncoding Potential: -1.208 Folding energies... MFEI: -26.186 AMFE: -0.675 GC content %: 38.766 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
