Gene
Taestivum Traes 4BS 979B49D1A
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BS_979B49D1A Traes_4BS_979B49D1A |
ta_iwgsc_4bs_v1_4872944 | 3987 | 6036 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BS_979B49D1A.1 Traes_4BS_979B49D1A.1 PAC:31904673 |
Low | No | 643 | Get ORF Coding potential... Type: noncoding Potential: -0.936 Folding energies... MFEI: -27.978 AMFE: -0.654 GC content %: 42.768 | |
| Taestivum_Traes_4BS_979B49D1A.2 Traes_4BS_979B49D1A.2 PAC:31904670 |
Low | No | 861 | Get ORF Coding potential... Type: noncoding Potential: -0.818 Folding energies... MFEI: -26.341 AMFE: -0.632 GC content %: 41.696 | |
| Taestivum_Traes_4BS_979B49D1A.3 Traes_4BS_979B49D1A.3 PAC:31904671 |
Low | No | 453 | Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -29.007 AMFE: -0.626 GC content %: 46.358 | |
| Taestivum_Traes_4BS_979B49D1A.4 Traes_4BS_979B49D1A.4 PAC:31904672 |
Low | No | 728 | Get ORF Coding potential... Type: noncoding Potential: -0.780 Folding energies... MFEI: -26.580 AMFE: -0.616 GC content %: 43.132 | |
| Taestivum_Traes_4BS_979B49D1A.5 Traes_4BS_979B49D1A.5 PAC:31904674 |
High | No | 522 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -25.670 AMFE: -0.612 GC content %: 41.954 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
