Gene
Taestivum Traes 4BS F6FB4C4BA
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4BS_F6FB4C4BA Traes_4BS_F6FB4C4BA |
ta_iwgsc_4bs_v1_4943146 | 3490 | 9202 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4BS_F6FB4C4BA.12 Traes_4BS_F6FB4C4BA.12 PAC:32012767 |
High | No | 4029 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -25.335 AMFE: -0.621 GC content %: 40.779 | |
| Taestivum_Traes_4BS_F6FB4C4BA.18 Traes_4BS_F6FB4C4BA.18 PAC:32012774 |
High | No | 3913 | Get ORF Coding potential... Type: noncoding Potential: -0.993 Folding energies... MFEI: -22.455 AMFE: -0.585 GC content %: 38.385 | |
| Taestivum_Traes_4BS_F6FB4C4BA.19 Traes_4BS_F6FB4C4BA.19 PAC:32012770 |
High | No | 2197 | Get ORF Coding potential... Type: noncoding Potential: -0.965 Folding energies... MFEI: -22.608 AMFE: -0.576 GC content %: 39.281 | |
| Taestivum_Traes_4BS_F6FB4C4BA.28 Traes_4BS_F6FB4C4BA.28 PAC:32012780 |
High | No | 3963 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -22.958 AMFE: -0.599 GC content %: 38.330 | |
| Taestivum_Traes_4BS_F6FB4C4BA.29 Traes_4BS_F6FB4C4BA.29 PAC:32012783 |
High | No | 4117 | Get ORF Coding potential... Type: noncoding Potential: -0.995 Folding energies... MFEI: -22.010 AMFE: -0.614 GC content %: 35.851 | |
| Taestivum_Traes_4BS_F6FB4C4BA.37 Traes_4BS_F6FB4C4BA.37 PAC:32012793 |
High | No | 3448 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -25.640 AMFE: -0.615 GC content %: 41.705 | |
| Taestivum_Traes_4BS_F6FB4C4BA.39 Traes_4BS_F6FB4C4BA.39 PAC:32012784 |
High | No | 2657 | Get ORF Coding potential... Type: noncoding Potential: -1.305 Folding energies... MFEI: -23.810 AMFE: -0.583 GC content %: 40.836 | |
| Taestivum_Traes_4BS_F6FB4C4BA.40 Traes_4BS_F6FB4C4BA.40 PAC:32012792 |
High | No | 1767 | Get ORF Coding potential... Type: noncoding Potential: -1.313 Folding energies... MFEI: -21.225 AMFE: -0.564 GC content %: 37.634 | |
| Taestivum_Traes_4BS_F6FB4C4BA.43 Traes_4BS_F6FB4C4BA.43 PAC:32012799 |
High | No | 1981 | Get ORF Coding potential... Type: noncoding Potential: -1.123 Folding energies... MFEI: -30.469 AMFE: -0.637 GC content %: 47.804 | |
| Taestivum_Traes_4BS_F6FB4C4BA.45 Traes_4BS_F6FB4C4BA.45 PAC:32012798 |
High | No | 2646 | Get ORF Coding potential... Type: noncoding Potential: -0.975 Folding energies... MFEI: -27.581 AMFE: -0.632 GC content %: 43.613 | |
| Taestivum_Traes_4BS_F6FB4C4BA.46 Traes_4BS_F6FB4C4BA.46 PAC:32012800 |
High | No | 2300 | Get ORF Coding potential... Type: noncoding Potential: -0.967 Folding energies... MFEI: -23.170 AMFE: -0.586 GC content %: 39.565 | |
| Taestivum_Traes_4BS_F6FB4C4BA.47 Traes_4BS_F6FB4C4BA.47 PAC:32012761 |
High | No | 396 | Get ORF Coding potential... Type: noncoding Potential: -1.055 Folding energies... MFEI: -28.611 AMFE: -0.476 GC content %: 60.101 | |
| Taestivum_Traes_4BS_F6FB4C4BA.8 Traes_4BS_F6FB4C4BA.8 PAC:32012762 |
High | No | 3791 | Get ORF Coding potential... Type: noncoding Potential: -1.150 Folding energies... MFEI: -23.174 AMFE: -0.606 GC content %: 38.248 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
