GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4BS_FDE023114 Traes_4BS_FDE023114	ta_iwgsc_4bs_v1_4949899	966	1686	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4BS_FDE023114.1 Traes_4BS_FDE023114.1 PAC:31921508	Low	No	242		Get ORF Coding potential... Type: noncoding Potential: -0.860 Folding energies... MFEI: -32.314 AMFE: -0.480 GC content %: 67.355
Taestivum_Traes_4BS_FDE023114.2 Traes_4BS_FDE023114.2 PAC:31921506	High	No	528		Get ORF Coding potential... Type: noncoding Potential: -0.697 Folding energies... MFEI: -28.182 AMFE: -0.503 GC content %: 56.061
Taestivum_Traes_4BS_FDE023114.3 Traes_4BS_FDE023114.3 PAC:31921507	High	No	404		Get ORF Coding potential... Type: noncoding Potential: -0.590 Folding energies... MFEI: -32.450 AMFE: -0.510 GC content %: 63.614

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).