GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DL_193C0F8F9 Traes_4DL_193C0F8F9	ta_iwgsc_4dl_v3_14348262	28	1574	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DL_193C0F8F9.1 Traes_4DL_193C0F8F9.1 PAC:31982463	Low	No	650		Get ORF Coding potential... Type: noncoding Potential: -0.840 Folding energies... MFEI: -31.123 AMFE: -0.787 GC content %: 39.538
Taestivum_Traes_4DL_193C0F8F9.2 Traes_4DL_193C0F8F9.2 PAC:31982464	High	No	756		Get ORF Coding potential... Type: noncoding Potential: -0.888 Folding energies... MFEI: -26.402 AMFE: -0.638 GC content %: 41.402
Taestivum_Traes_4DL_193C0F8F9.3 Traes_4DL_193C0F8F9.3 PAC:31982465	Low	No	289		Get ORF Coding potential... Type: noncoding Potential: -0.782 Folding energies... MFEI: -28.097 AMFE: -0.629 GC content %: 44.637
Taestivum_Traes_4DL_193C0F8F9.4 Traes_4DL_193C0F8F9.4 PAC:31982466	Low	No	596		Get ORF Coding potential... Type: noncoding Potential: -1.144 Folding energies... MFEI: -25.252 AMFE: -0.622 GC content %: 40.604
Taestivum_Traes_4DL_193C0F8F9.5 Traes_4DL_193C0F8F9.5 PAC:31982467	High	No	610		Get ORF Coding potential... Type: noncoding Potential: -1.090 Folding energies... MFEI: -31.098 AMFE: -0.800 GC content %: 38.852
Taestivum_Traes_4DL_193C0F8F9.6 Traes_4DL_193C0F8F9.6 PAC:31982468	High	No	546		Get ORF Coding potential... Type: noncoding Potential: -0.958 Folding energies... MFEI: -30.934 AMFE: -0.800 GC content %: 38.645

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).