Gene
Taestivum Traes 4DL 23F6D3617
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_4DL_23F6D3617 Traes_4DL_23F6D3617 |
ta_iwgsc_4dl_v3_14324903 | 1306 | 4882 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_4DL_23F6D3617.1 Traes_4DL_23F6D3617.1 PAC:31833253 |
Low | No | 2119 | Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -27.310 AMFE: -0.689 GC content %: 39.641 | |
| Taestivum_Traes_4DL_23F6D3617.10 Traes_4DL_23F6D3617.10 PAC:31833257 |
Low | No | 1301 | Get ORF Coding potential... Type: noncoding Potential: -0.105 Folding energies... MFEI: -28.555 AMFE: -0.659 GC content %: 43.351 | |
| Taestivum_Traes_4DL_23F6D3617.11 Traes_4DL_23F6D3617.11 PAC:31833262 |
Low | No | 1325 | Get ORF Coding potential... Type: noncoding Potential: -0.105 Folding energies... MFEI: -28.883 AMFE: -0.671 GC content %: 43.019 | |
| Taestivum_Traes_4DL_23F6D3617.12 Traes_4DL_23F6D3617.12 PAC:31833263 |
Low | No | 1252 | Get ORF Coding potential... Type: noncoding Potential: -0.097 Folding energies... MFEI: -28.091 AMFE: -0.671 GC content %: 41.853 | |
| Taestivum_Traes_4DL_23F6D3617.15 Traes_4DL_23F6D3617.15 PAC:31833264 |
Low | No | 1022 | Get ORF Coding potential... Type: noncoding Potential: -0.062 Folding energies... MFEI: -27.211 AMFE: -0.648 GC content %: 41.977 | |
| Taestivum_Traes_4DL_23F6D3617.2 Traes_4DL_23F6D3617.2 PAC:31833252 |
Low | No | 937 | Get ORF Coding potential... Type: noncoding Potential: -0.111 Folding energies... MFEI: -29.072 AMFE: -0.652 GC content %: 44.610 | |
| Taestivum_Traes_4DL_23F6D3617.3 Traes_4DL_23F6D3617.3 PAC:31833254 |
Low | No | 2597 | Get ORF Coding potential... Type: noncoding Potential: -0.250 Folding energies... MFEI: -26.712 AMFE: -0.694 GC content %: 38.467 | |
| Taestivum_Traes_4DL_23F6D3617.4 Traes_4DL_23F6D3617.4 PAC:31833256 |
Low | No | 1706 | Get ORF Coding potential... Type: noncoding Potential: -0.041 Folding energies... MFEI: -26.600 AMFE: -0.677 GC content %: 39.273 | |
| Taestivum_Traes_4DL_23F6D3617.6 Traes_4DL_23F6D3617.6 PAC:31833260 |
Low | No | 1811 | Get ORF Coding potential... Type: noncoding Potential: -0.145 Folding energies... MFEI: -27.223 AMFE: -0.668 GC content %: 40.751 | |
| Taestivum_Traes_4DL_23F6D3617.7 Traes_4DL_23F6D3617.7 PAC:31833259 |
Low | No | 1842 | Get ORF Coding potential... Type: noncoding Potential: -0.147 Folding energies... MFEI: -27.638 AMFE: -0.676 GC content %: 40.879 | |
| Taestivum_Traes_4DL_23F6D3617.8 Traes_4DL_23F6D3617.8 PAC:31833258 |
Low | No | 1864 | Get ORF Coding potential... Type: noncoding Potential: -0.152 Folding energies... MFEI: -27.194 AMFE: -0.674 GC content %: 40.343 | |
| Taestivum_Traes_4DL_23F6D3617.9 Traes_4DL_23F6D3617.9 PAC:31833261 |
Low | No | 1055 | Get ORF Coding potential... Type: noncoding Potential: -0.110 Folding energies... MFEI: -28.313 AMFE: -0.659 GC content %: 42.938 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
