GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DL_37470D652 Traes_4DL_37470D652	ta_iwgsc_4dl_v3_14436350	742	3863	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DL_37470D652.5 Traes_4DL_37470D652.5 PAC:32023726	Low	No	260		Get ORF Coding potential... Type: noncoding Potential: -0.173 Folding energies... MFEI: -26.885 AMFE: -0.568 GC content %: 47.308
Taestivum_Traes_4DL_37470D652.6 Traes_4DL_37470D652.6 PAC:32023727	Low	No	219		Get ORF Coding potential... Type: noncoding Potential: -0.180 Folding energies... MFEI: -23.379 AMFE: -0.492 GC content %: 47.489

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).