GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DL_4D4517045 Traes_4DL_4D4517045	ta_iwgsc_4dl_v3_14377597	1696	2347	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DL_4D4517045.1 Traes_4DL_4D4517045.1 PAC:31848059	High	No	438		Get ORF Coding potential... Type: noncoding Potential: -0.599 Folding energies... MFEI: -37.489 AMFE: -0.542 GC content %: 69.178
Taestivum_Traes_4DL_4D4517045.2 Traes_4DL_4D4517045.2 PAC:31848057	High	No	572		Get ORF Coding potential... Type: noncoding Potential: -0.643 Folding energies... MFEI: -38.776 AMFE: -0.557 GC content %: 69.580
Taestivum_Traes_4DL_4D4517045.3 Traes_4DL_4D4517045.3 PAC:31848058	High	No	438		Get ORF Coding potential... Type: noncoding Potential: -0.599 Folding energies... MFEI: -37.489 AMFE: -0.542 GC content %: 69.178

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).