GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DL_5803629C6 Traes_4DL_5803629C6	ta_iwgsc_4dl_v3_14454818	2812	3830	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DL_5803629C6.1 Traes_4DL_5803629C6.1 PAC:31995436	High	No	1019		Get ORF Coding potential... Type: noncoding Potential: -0.770 Folding energies... MFEI: -30.844 AMFE: -0.555 GC content %: 55.545
Taestivum_Traes_4DL_5803629C6.2 Traes_4DL_5803629C6.2 PAC:31995437	High	No	360		Get ORF Coding potential... Type: noncoding Potential: -0.554 Folding energies... MFEI: -39.639 AMFE: -0.513 GC content %: 77.222

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).