GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DL_909858768 Traes_4DL_909858768	ta_iwgsc_4dl_v3_14323455	864	7754	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DL_909858768.1 Traes_4DL_909858768.1 PAC:31738649	Low	No	888		Get ORF Coding potential... Type: noncoding Potential: -0.105 Folding energies... MFEI: -40.236 AMFE: -0.692 GC content %: 58.108
Taestivum_Traes_4DL_909858768.5 Traes_4DL_909858768.5 PAC:31738652	Low	No	1021		Get ORF Coding potential... Type: noncoding Potential: -0.008 Folding energies... MFEI: -34.652 AMFE: -0.637 GC content %: 54.358

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).