GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_4DL_AB716998C Traes_4DL_AB716998C	ta_iwgsc_4dl_v3_14464400	938	3760	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_4DL_AB716998C.1 Traes_4DL_AB716998C.1 PAC:31817307	High	No	1228		Get ORF Coding potential... Type: noncoding Potential: -0.210 Folding energies... MFEI: -35.749 AMFE: -0.606 GC content %: 59.039
Taestivum_Traes_4DL_AB716998C.2 Traes_4DL_AB716998C.2 PAC:31817308	High	No	351		Get ORF Coding potential... Type: noncoding Potential: -0.373 Folding energies... MFEI: -38.405 AMFE: -0.574 GC content %: 66.952

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).